Sequence Similarity Clusters for the Entities in PDB 1PPD

Entity #1 | Chains: A
2-HYDROXYETHYL-THIOPAPAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 16 3398
95 % 8 24 2276 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 8 24 2343
70 % 8 24 2340
50 % 76 172 159
40 % 89 212 137
30 % 98 248 125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures