1PPB

THE REFINED 1.9 ANGSTROMS CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN: INTERACTION WITH D-PHE-PRO-ARG CHLOROMETHYLKETONE AND SIGNIFICANCE OF THE TYR-PRO-PRO-TRP INSERTION SEGMENT


Sequence Similarity Clusters for the Entities in PDB 1PPB

Entity #1 | Chains: L
ALPHA-THROMBIN (SMALL SUBUNIT) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 334 52
95 % 122 342 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 122 342 68
70 % 122 342 81
50 % 122 342 113
40 % 122 342 135
30 % 122 342 145
Entity #2 | Chains: H
ALPHA-THROMBIN (LARGE SUBUNIT) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 117 332 53
95 % 126 378 54 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 126 385 56
70 % 126 409 46
50 % 126 409 85
40 % 846 1894 3
30 % 850 1908 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures