Sequence Similarity Clusters for the Entities in PDB 1PP9

Entity #1 | Chains: A,N
Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 1190
95 % 3 29 1251 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 3 30 1195
70 % 3 47 674
50 % 3 47 727
40 % 3 47 759
30 % 4 55 634
Entity #10 | Chains: J,W
Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 27 965
95 % 3 32 1112 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.2
PDBFlex
90 % 3 32 1135
70 % 3 46 696
50 % 3 46 744
40 % 3 46 774
30 % 3 46 769
Entity #2 | Chains: B,O
Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1191
95 % 3 30 1252 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 34 1115
70 % 3 48 675
50 % 3 48 728
40 % 3 48 760
30 % 3 48 755
Entity #3 | Chains: C,P
Cytochrome b protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 25 1116
95 % 3 25 1514 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 3 29 1201
70 % 3 46 676
50 % 4 54 610
40 % 4 62 457
30 % 4 62 458
Entity #4 | Chains: D,Q
Cytochrome c1, heme protein, mitochondrial protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 26 1002
95 % 3 29 1261 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 3 29 1289
70 % 3 43 752
50 % 4 51 654
40 % 4 51 686
30 % 4 59 478
Entity #5 | Chains: E,R
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 1608
95 % 3 24 1624 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.5
PDBFlex
90 % 3 27 1514
70 % 3 41 833
50 % 4 49 721
40 % 4 57 498
30 % 4 57 499
Entity #6 | Chains: F,S
Ubiquinol-cytochrome C reductase complex 14 kDa protein protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1312
95 % 3 29 1182 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 3 32 1132
70 % 3 46 691
50 % 3 46 741
40 % 3 46 771
30 % 3 46 765
Entity #7 | Chains: G,T
Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 24 1177
95 % 3 29 1185 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 3 32 1134
70 % 3 32 1165
50 % 3 46 742
40 % 3 46 773
30 % 3 46 768
Entity #8 | Chains: H,U
Ubiquinol-cytochrome C reductase complex 11 kDa protein protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 1576
95 % 3 24 1781 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 3 38 870
70 % 3 42 792
50 % 3 42 840
40 % 3 42 872
30 % 3 42 855
Entity #9 | Chains: I,V
Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 2529
95 % 3 16 2809 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.0
PDBFlex
90 % 3 17 2605
70 % 3 17 2592
50 % 3 19 2122
40 % 3 19 2113
30 % 3 19 2029

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.