Sequence Similarity Clusters for the Entities in PDB 1PP8

Entity #1 | Chains: E,I,K,Y
ALPHA-SCS INR dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: G,J,R,T
ALPHA-SCS INR dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,M,O,P,U,V
39 kDa initiator binding protein protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10940
95 % 2 2 10924 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 2 10772
70 % 2 2 10234
50 % 2 2 9266
40 % 2 2 8482
30 % 2 2 7469

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures