Sequence Similarity Clusters for the Entities in PDB 1PP8

Entity #1 | Chains: E,I,K,Y
ALPHA-SCS INR dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: G,J,R,T
ALPHA-SCS INR dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,M,O,P,U,V
39 kDa initiator binding protein protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10718
95 % 2 2 10729 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 2 10581
70 % 2 2 10047
50 % 2 2 9098
40 % 2 2 8332
30 % 2 2 7342

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.