Sequence Similarity Clusters for the Entities in PDB 1PP4

Entity #1 | Chains: A,B
Rhamnogalacturonan acetylesterase protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 15307
95 % 5 5 12355 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 5 12178
70 % 5 5 11497
50 % 5 5 10279
40 % 5 5 9325
30 % 5 5 8132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1K7C 1 A rhamnogalacturonan acetylesterase 5053 3.1.1.86 | Details
2 3C1U 1 A Rhamnogalacturonan acetylesterase 5053 3.1.1.86 | Details
3 1DEO 1 A RHAMNOGALACTURONAN ACETYLESTERASE 5053 3.1.1.86 | Details
4 1DEX 1 A RHAMNOGALACTURONAN ACETYLESTERASE 5053 3.1.1.86 | Details
5 1PP4 1 A, B Rhamnogalacturonan acetylesterase 5053 3.1.1.86 | Details