1POV

ROLE AND MECHANISM OF THE MATURATION CLEAVAGE OF VP0 IN POLIOVIRUS ASSEMBLY: STRUCTURE OF THE EMPTY CAPSID ASSEMBLY INTERMEDIATE AT 2.9 ANGSTROMS RESOLUTION


Sequence Similarity Clusters for the Entities in PDB 1POV

Entity #1 | Chains: 0
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55040
95 % 1 1 45213
90 % 1 1 43009
70 % 1 1 37893
50 % 5 13 1865
40 % 5 13 1848
30 % 5 13 1786
Entity #2 | Chains: 1
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 25 2186
95 % 9 25 2487 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 9 25 2558
70 % 12 36 1581
50 % 20 57 1055
40 % 55 160 295
30 % 55 160 312
Entity #3 | Chains: 3
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 33 1496
95 % 10 33 1766 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 10 33 1810
70 % 17 49 1173
50 % 55 169 254
40 % 55 171 279
30 % 72 210 164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures