Sequence Similarity Clusters for the Entities in PDB 1POV

Entity #1 | Chains: 0
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54269
95 % 1 1 39222
90 % 1 1 37486
70 % 1 1 33348
50 % 5 12 1782
40 % 5 12 1788
30 % 5 12 1739
Entity #2 | Chains: 1
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 2239
95 % 9 25 2295 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 9 25 2359
70 % 12 36 1512
50 % 17 42 1331
40 % 56 158 273
30 % 56 158 282
Entity #3 | Chains: 3
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 31 1311
95 % 9 31 1775 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 9 31 1809
70 % 17 48 1126
50 % 56 167 239
40 % 56 169 255
30 % 72 208 146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.