Sequence Similarity Clusters for the Entities in PDB 1POV

Entity #1 | Chains: 0
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55047
95 % 1 1 39791
90 % 1 1 38008
70 % 1 1 33771
50 % 5 13 1760
40 % 5 13 1765
30 % 5 13 1714
Entity #2 | Chains: 1
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 21 2301
95 % 9 25 2332 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 9 25 2398
70 % 12 36 1538
50 % 17 42 1354
40 % 55 159 276
30 % 55 159 285
Entity #3 | Chains: 3
POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 31 1347
95 % 9 31 1803 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 9 31 1838
70 % 17 48 1148
50 % 55 168 243
40 % 55 170 261
30 % 71 209 147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures