Sequence Similarity Clusters for the Entities in PDB 1POD

Entity #1 | Chains: A
PHOSPHOLIPASE A2 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 1796
95 % 6 17 1682 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 6 17 1721
70 % 6 17 1731
50 % 103 181 154
40 % 168 307 103
30 % 168 307 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures