Sequence Similarity Clusters for the Entities in PDB 1PO1

Entity #1 | Chains: 0
POLIOVIRUS TYPE 1 MAHONEY protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
POLIOVIRUS TYPE 1 MAHONEY protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2239
95 % 5 25 2295 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 25 2359
70 % 7 36 1512
50 % 11 42 1331
40 % 40 158 273
30 % 40 158 282
Entity #3 | Chains: 2
POLIOVIRUS TYPE 1 MAHONEY protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 29 1441
95 % 5 31 1771 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 31 1806
70 % 11 48 1123
50 % 39 159 293
40 % 39 159 310
30 % 52 194 165
Entity #4 | Chains: 3
POLIOVIRUS TYPE 1 MAHONEY protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 31 1311
95 % 5 31 1775 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 5 31 1809
70 % 11 48 1126
50 % 40 167 239
40 % 40 169 255
30 % 54 208 146
Entity #5 | Chains: 4
POLIOVIRUS TYPE 1 MAHONEY protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 21 2304
95 % 6 23 2681 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 7 33 1693
70 % 16 87 555
50 % 34 122 428
40 % 35 123 455
30 % 35 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.