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Crystal Structure of the Wild Type Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNX, CONTAINS ONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT IS IN THE PDB FILE 1PNY.
Sequence Clustering and Redundancy Reduction Results
1PNX
Sequence Clusters for the Sequence Entities in PDB 1PNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1537 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 265 27
95% 254 267 47
90% 254 267 49
70% 254 267 59
50% 328 382 34
40% 328 382 45
30% 328 387 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 268 25
95% 254 268 43
90% 254 268 45
70% 254 268 55
50% 322 376 41
40% 357 436 38
30% 357 436 51
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 237 35
95% 254 275 35
90% 254 275 37
70% 322 388 24
50% 322 388 33
40% 322 388 44
30% 322 388 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 269 22
95% 254 269 41
90% 254 269 43
70% 254 269 53
50% 322 378 38
40% 322 378 51
30% 355 434 54
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 267 26
95% 254 267 48
90% 254 267 50
70% 254 267 60
50% 254 267 93
40% 254 267 119
30% 254 267 140
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 271 20
95% 259 276 32
90% 259 276 34
70% 259 276 47
50% 330 389 32
40% 330 389 43
30% 330 389 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 263 28
95% 254 268 45
90% 254 268 47
70% 254 268 57
50% 254 268 91
40% 254 268 117
30% 322 376 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 92 220
95% 249 262 49
90% 253 266 51
70% 253 266 61
50% 253 266 94
40% 253 266 120
30% 253 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 10 4899
95% 31 38 1012
90% 31 38 1035
70% 31 38 1078
50% 31 38 1154
40% 31 38 1174
30% 31 38 1150
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 37 734
95% 31 37 1040
90% 31 37 1061
70% 31 37 1109
50% 324 379 37
40% 324 379 49
30% 324 379 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 268 23
95% 254 269 38
90% 254 269 41
70% 254 269 51
50% 254 269 90
40% 322 376 53
30% 322 376 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 61 362
95% 254 267 46
90% 254 267 48
70% 254 267 58
50% 254 267 92
40% 254 267 118
30% 254 267 139
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 37 728
95% 31 37 1031
90% 31 37 1052
70% 31 37 1095
50% 55 81 438
40% 55 82 457
30% 55 82 475
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 261 29
95% 255 269 39
90% 255 269 42
70% 255 269 52
50% 323 376 39
40% 323 377 52
30% 323 377 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 268 24
95% 255 268 42
90% 255 268 44
70% 255 268 54
50% 324 380 36
40% 324 380 48
30% 324 382 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 257 273 18
95% 263 279 29
90% 263 279 30
70% 263 279 44
50% 263 279 82
40% 263 279 106
30% 289 326 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 272 19
95% 256 273 36
90% 256 273 38
70% 256 273 49
50% 283 321 56
40% 283 322 73
30% 283 322 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 268 21
95% 252 268 40
90% 256 272 39
70% 256 272 50
50% 326 382 35
40% 327 384 46
30% 361 441 47
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 113 138
95% 254 268 44
90% 254 268 46
70% 254 268 56
50% 322 376 40
40% 322 376 54
30% 355 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.