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Crystal Structure of the Wild Type Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNX, CONTAINS ONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT IS IN THE PDB FILE 1PNY.
Sequence Clustering and Redundancy Reduction Results
1PNX
Sequence Clusters for the Sequence Entities in PDB 1PNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1537 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 265 27
95% 254 267 47
90% 254 267 49
70% 254 267 59
50% 330 384 34
40% 330 384 46
30% 330 389 65
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 268 25
95% 254 268 43
90% 254 268 45
70% 254 268 55
50% 324 378 41
40% 373 454 34
30% 373 454 44
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 216 237 35
95% 254 275 35
90% 254 275 37
70% 324 390 24
50% 324 390 33
40% 324 390 45
30% 324 390 68
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 269 22
95% 254 269 41
90% 254 269 43
70% 254 269 53
50% 324 380 38
40% 324 380 51
30% 371 452 47
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 267 26
95% 254 267 48
90% 254 267 50
70% 254 267 60
50% 254 267 94
40% 254 267 119
30% 254 267 141
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 271 20
95% 259 276 32
90% 259 276 34
70% 259 276 47
50% 332 391 32
40% 332 391 43
30% 332 391 67
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 263 28
95% 254 268 45
90% 254 268 47
70% 254 268 57
50% 254 268 92
40% 254 268 117
30% 324 378 76
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 92 221
95% 249 262 49
90% 253 266 51
70% 253 266 61
50% 253 266 95
40% 253 266 120
30% 253 266 142
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 10 4941
95% 31 38 1053
90% 31 38 1074
70% 31 38 1105
50% 31 38 1166
40% 31 38 1187
30% 31 38 1164
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 37 769
95% 31 37 1079
90% 31 37 1098
70% 31 37 1137
50% 326 381 37
40% 326 381 49
30% 326 381 72
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 268 23
95% 254 269 38
90% 254 269 41
70% 254 269 51
50% 254 269 91
40% 324 378 53
30% 324 378 75
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 61 363
95% 254 267 46
90% 254 267 48
70% 254 267 58
50% 254 267 93
40% 254 267 118
30% 254 267 140
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 37 763
95% 31 37 1070
90% 31 37 1090
70% 31 37 1124
50% 57 83 432
40% 57 84 455
30% 57 84 473
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 261 29
95% 255 269 39
90% 255 269 42
70% 255 269 52
50% 325 378 39
40% 325 379 52
30% 325 379 74
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 268 24
95% 255 268 42
90% 255 268 44
70% 255 268 54
50% 326 382 36
40% 326 382 48
30% 326 384 71
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 257 273 18
95% 263 279 29
90% 263 279 30
70% 263 279 44
50% 263 279 86
40% 263 279 108
30% 291 328 94
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 272 19
95% 256 273 36
90% 256 273 38
70% 256 273 49
50% 285 323 56
40% 285 324 74
30% 285 324 96
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 268 21
95% 252 268 40
90% 256 272 39
70% 256 272 50
50% 328 384 35
40% 329 386 47
30% 377 459 43
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 113 155
95% 254 268 44
90% 254 268 46
70% 254 268 56
50% 324 378 40
40% 324 378 54
30% 371 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.