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Crystal Structure of the Wild Type Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNX, CONTAINS ONLY MOLECULES OF THE 30S RIBOSOMAL SUBUNIT. THE 50S SUBUNIT IS IN THE PDB FILE 1PNY.
Sequence Clustering and Redundancy Reduction Results
1PNX
Sequence Clusters for the Sequence Entities in PDB 1PNX
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1537 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 252 29
95% 241 254 48
90% 241 254 51
70% 241 254 63
50% 315 369 34
40% 315 369 48
30% 315 374 67
Entity #11: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 255 27
95% 241 255 44
90% 241 255 47
70% 241 255 59
50% 309 363 42
40% 324 403 39
30% 324 403 53
Entity #12: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 224 37
95% 241 262 36
90% 241 262 38
70% 309 375 24
50% 309 375 33
40% 309 375 47
30% 309 375 71
Entity #13: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 256 24
95% 241 256 42
90% 241 256 45
70% 241 256 57
50% 309 365 39
40% 309 365 53
30% 322 401 57
Entity #14: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 254 28
95% 241 254 49
90% 241 254 52
70% 241 254 64
50% 241 254 99
40% 241 254 124
30% 241 254 144
Entity #15: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 258 21
95% 246 263 35
90% 246 263 37
70% 246 263 48
50% 317 376 32
40% 317 376 45
30% 317 376 69
Entity #16: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 250 31
95% 241 255 46
90% 241 255 49
70% 241 255 61
50% 241 255 97
40% 241 255 122
30% 309 363 78
Entity #17: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 92 219
95% 236 249 51
90% 240 253 53
70% 240 253 65
50% 240 253 100
40% 240 253 126
30% 240 253 146
Entity #18: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 10 4832
95% 29 36 1041
90% 29 36 1064
70% 29 36 1093
50% 29 36 1157
40% 29 36 1190
30% 29 36 1178
Entity #19: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 35 742
95% 29 35 1070
90% 29 35 1092
70% 29 35 1130
50% 311 366 38
40% 311 366 52
30% 311 366 75
Entity #2: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 255 25
95% 241 256 39
90% 241 256 43
70% 241 256 55
50% 241 256 96
40% 309 363 55
30% 309 363 77
Entity #20: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 61 359
95% 241 254 47
90% 241 254 50
70% 241 254 62
50% 241 254 98
40% 241 254 123
30% 241 254 143
Entity #3: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 35 735
95% 29 35 1063
90% 29 35 1085
70% 29 35 1119
50% 53 79 449
40% 53 80 467
30% 53 80 487
Entity #4: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 248 32
95% 242 256 40
90% 242 256 44
70% 242 256 56
50% 310 363 40
40% 310 364 54
30% 310 364 76
Entity #5: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 242 255 26
95% 242 255 43
90% 242 255 46
70% 242 255 58
50% 311 367 37
40% 311 367 51
30% 311 369 72
Entity #6: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 244 260 18
95% 250 266 34
90% 250 266 36
70% 250 266 47
50% 250 266 88
40% 250 266 112
30% 276 313 95
Entity #7: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 243 259 20
95% 243 260 37
90% 243 260 39
70% 243 260 51
50% 270 308 57
40% 270 309 74
30% 270 309 97
Entity #8: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 255 23
95% 239 255 41
90% 243 259 40
70% 243 259 52
50% 313 369 36
40% 314 371 49
30% 328 408 50
Entity #9: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 113 134
95% 241 255 45
90% 241 255 48
70% 241 255 60
50% 309 363 41
40% 309 363 56
30% 322 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.