Sequence Similarity Clusters for the Entities in PDB 1PNV

Entity #1 | Chains: A,B
GLYCOSYLTRANSFERASE GTFA protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17602
95 % 2 2 16226 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.8
PDBFlex
90 % 2 2 15878
70 % 4 4 12765
50 % 6 6 7404
40 % 6 6 6811
30 % 6 6 5965
Entity #2 | Chains: C
VANCOMYCIN protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures