Sequence Similarity Clusters for the Entities in PDB 1PNV

Entity #1 | Chains: A,B
GLYCOSYLTRANSFERASE GTFA protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17927
95 % 2 2 16253 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.8
PDBFlex
90 % 2 2 15942
70 % 4 4 10698
50 % 6 6 6728
40 % 6 6 6267
30 % 6 6 5606
Entity #2 | Chains: C
VANCOMYCIN protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.