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Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNS, CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNA MOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU.
Sequence Clustering and Redundancy Reduction Results
1PNS
Sequence Clusters for the Sequence Entities in PDB 1PNS
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 268 21
95% 251 268 40
90% 255 272 39
70% 255 272 50
50% 325 382 35
40% 326 384 46
30% 374 455 44
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 113 139
95% 253 268 44
90% 253 268 46
70% 253 268 56
50% 321 376 40
40% 321 376 54
30% 368 446 52
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 265 27
95% 253 267 47
90% 253 267 49
70% 253 267 59
50% 327 382 34
40% 327 382 45
30% 327 387 65
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 268 25
95% 253 268 43
90% 253 268 45
70% 253 268 55
50% 321 376 41
40% 370 450 35
30% 370 450 45
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 237 35
95% 253 275 35
90% 253 275 37
70% 321 388 24
50% 321 388 33
40% 321 388 44
30% 321 388 68
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 269 22
95% 253 269 41
90% 253 269 43
70% 253 269 53
50% 321 378 38
40% 321 378 51
30% 368 448 49
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 267 26
95% 253 267 48
90% 253 267 50
70% 253 267 60
50% 253 267 93
40% 253 267 119
30% 253 267 140
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 271 20
95% 258 276 32
90% 258 276 34
70% 258 276 47
50% 329 389 32
40% 329 389 43
30% 329 389 67
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 263 28
95% 253 268 45
90% 253 268 47
70% 253 268 57
50% 253 268 91
40% 253 268 117
30% 321 376 76
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 92 221
95% 248 262 49
90% 252 266 51
70% 252 266 61
50% 252 266 94
40% 252 266 120
30% 252 266 142
Entity #2: Chains: V,W - tRNA-Phe rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 10 4909
95% 30 38 1050
90% 30 38 1073
70% 30 38 1104
50% 30 38 1167
40% 30 38 1183
30% 30 38 1160
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 37 766
95% 30 37 1074
90% 30 37 1095
70% 30 37 1133
50% 323 379 37
40% 323 379 49
30% 323 379 72
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 61 362
95% 253 267 46
90% 253 267 48
70% 253 267 58
50% 253 267 92
40% 253 267 118
30% 253 267 139
Entity #3: Chains: U - mRNA rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 253 268 23
95% 253 269 38
90% 253 269 41
70% 253 269 51
50% 253 269 90
40% 321 376 53
30% 321 376 75
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 37 760
95% 30 37 1065
90% 30 37 1087
70% 30 37 1120
50% 54 81 439
40% 54 82 461
30% 54 82 477
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 251 261 29
95% 254 269 39
90% 254 269 42
70% 254 269 52
50% 322 376 39
40% 322 377 52
30% 322 377 74
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 268 24
95% 254 268 42
90% 254 268 44
70% 254 268 54
50% 323 380 36
40% 323 380 48
30% 323 382 71
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 273 18
95% 262 279 29
90% 262 279 30
70% 262 279 44
50% 262 279 83
40% 262 279 106
30% 288 326 94
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 272 19
95% 255 273 36
90% 255 273 38
70% 255 273 49
50% 282 321 56
40% 282 322 74
30% 282 322 96
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.