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Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli, 30S Subunit of 70S Ribosome. THIS FILE, 1PNS, CONTAINS THE 30S SUBUNIT, TWO TRNAS, AND ONE MRNA MOLECULE. THE 50S RIBOSOMAL SUBUNIT IS IN FILE 1PNU.
Sequence Clustering and Redundancy Reduction Results
1PNS
Sequence Clusters for the Sequence Entities in PDB 1PNS
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1527 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - 30S ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 255 23
95% 238 255 41
90% 242 259 40
70% 242 259 52
50% 312 369 36
40% 313 371 49
30% 327 408 50
Entity #11: Chains: I - 30S ribosomal protein S9 protein, length: 127 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 113 133
95% 240 255 45
90% 240 255 48
70% 240 255 60
50% 308 363 41
40% 308 363 56
30% 321 399 59
Entity #12: Chains: J - 30S ribosomal protein S10 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 252 29
95% 240 254 48
90% 240 254 51
70% 240 254 63
50% 314 369 34
40% 314 369 48
30% 314 374 67
Entity #13: Chains: K - 30S ribosomal protein S11 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 255 27
95% 240 255 44
90% 240 255 47
70% 240 255 59
50% 308 363 42
40% 323 403 39
30% 323 403 53
Entity #14: Chains: L - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 224 37
95% 240 262 36
90% 240 262 38
70% 308 375 24
50% 308 375 33
40% 308 375 47
30% 308 375 71
Entity #15: Chains: M - 30S ribosomal protein S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 256 24
95% 240 256 42
90% 240 256 45
70% 240 256 57
50% 308 365 39
40% 308 365 53
30% 321 401 57
Entity #16: Chains: N - 30S ribosomal protein S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 254 28
95% 240 254 49
90% 240 254 52
70% 240 254 64
50% 240 254 99
40% 240 254 124
30% 240 254 144
Entity #17: Chains: O - 30S ribosomal protein S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 258 21
95% 245 263 35
90% 245 263 37
70% 245 263 48
50% 316 376 32
40% 316 376 45
30% 316 376 69
Entity #18: Chains: P - 30S ribosomal protein S16 protein, length: 83 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 250 30
95% 240 255 46
90% 240 255 49
70% 240 255 61
50% 240 255 97
40% 240 255 122
30% 308 363 78
Entity #19: Chains: Q - 30S ribosomal protein S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 92 219
95% 235 249 51
90% 239 253 53
70% 239 253 65
50% 239 253 100
40% 239 253 126
30% 239 253 146
Entity #2: Chains: V,W - tRNA-Phe rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - 30S ribosomal protein S18 protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 10 4824
95% 28 36 1041
90% 28 36 1064
70% 28 36 1093
50% 28 36 1157
40% 28 36 1189
30% 28 36 1178
Entity #21: Chains: S - 30S ribosomal protein S19 protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 35 741
95% 28 35 1070
90% 28 35 1092
70% 28 35 1130
50% 310 366 38
40% 310 366 52
30% 310 366 75
Entity #22: Chains: T - 30S ribosomal protein S20 protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 61 359
95% 240 254 47
90% 240 254 50
70% 240 254 62
50% 240 254 98
40% 240 254 123
30% 240 254 143
Entity #3: Chains: U - mRNA rna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - 30S ribosomal protein S2 protein, length: 234 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 255 25
95% 240 256 39
90% 240 256 43
70% 240 256 55
50% 240 256 96
40% 308 363 55
30% 308 363 77
Entity #5: Chains: C - 30S ribosomal protein S3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 35 734
95% 28 35 1063
90% 28 35 1085
70% 28 35 1119
50% 52 79 449
40% 52 80 467
30% 52 80 487
Entity #6: Chains: D - 30S ribosomal protein S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 248 32
95% 241 256 40
90% 241 256 44
70% 241 256 56
50% 309 363 40
40% 309 364 54
30% 309 364 76
Entity #7: Chains: E - 30S ribosomal protein S5 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 255 26
95% 241 255 43
90% 241 255 46
70% 241 255 58
50% 310 367 37
40% 310 367 51
30% 310 369 72
Entity #8: Chains: F - 30S ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 243 260 18
95% 249 266 34
90% 249 266 36
70% 249 266 47
50% 249 266 88
40% 249 266 112
30% 275 313 94
Entity #9: Chains: G - 30S ribosomal protein S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 242 259 20
95% 242 260 37
90% 242 260 39
70% 242 260 51
50% 269 308 57
40% 269 309 73
30% 269 309 97
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.