Sequence Similarity Clusters for the Entities in PDB 1PNM

Entity #1 | Chains: A
PENICILLIN AMIDOHYDROLASE protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 20 2510
95 % 20 21 2944
90 % 20 21 2993
70 % 20 21 2964
50 % 21 22 2791
40 % 21 22 2749
30 % 21 22 2576
Entity #2 | Chains: B
PENICILLIN AMIDOHYDROLASE protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10043
95 % 23 24 2391 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 23 24 2454
70 % 23 26 1750
50 % 24 27 1734
40 % 24 29 1636
30 % 24 29 1607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.