Sequence Similarity Clusters for the Entities in PDB 1PNL

Entity #1 | Chains: A
PENICILLIN AMIDOHYDROLASE protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 20 2422
95 % 19 21 2855 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 19 21 2902
70 % 19 21 2878
50 % 19 22 2717
40 % 19 22 2674
30 % 19 22 2503
Entity #2 | Chains: B
PENICILLIN AMIDOHYDROLASE protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 9748
95 % 22 24 2310 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 22 24 2375
70 % 22 26 1688
50 % 22 27 1674
40 % 22 29 1583
30 % 22 29 1558

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.