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An Information Portal to 105097 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Sequence Clustering and Redundancy Reduction Results
1PN8
Sequence Clusters for the Sequence Entities in PDB 1PN8
Entity #1: Chains: D - E-tRNA rna, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 158 35
95% 189 196 35
90% 189 196 37
70% 266 275 24
50% 266 275 33
40% 266 275 45
30% 266 275 68
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 19 1831
95% 12 21 2080
90% 12 21 2109
70% 14 23 1943
50% 141 152 124
40% 144 155 150
30% 146 157 176
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.