POP-OUT | CLOSE
 
Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Sequence Clustering and Redundancy Reduction Results
1PN8
Sequence Clusters for the Sequence Entities in PDB 1PN8
Entity #1: Chains: D - E-tRNA rna, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 217 224 37
95% 255 262 36
90% 255 262 38
70% 366 375 24
50% 366 375 33
40% 366 375 47
30% 366 375 71
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 19 1709
95% 12 21 1963
90% 12 21 1994
70% 14 23 1837
50% 185 196 127
40% 188 199 155
30% 190 201 179
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.