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An Information Portal to 109093 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Sequence Clustering and Redundancy Reduction Results
1PN8
Sequence Clusters for the Sequence Entities in PDB 1PN8
Entity #1: Chains: D - E-tRNA rna, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 172 33
95% 206 213 32
90% 206 213 35
70% 286 295 24
50% 287 296 34
40% 287 296 44
30% 287 296 67
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 19 1914
95% 12 21 2168
90% 12 21 2193
70% 15 24 1844
50% 151 162 135
40% 154 165 155
30% 157 168 171
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.