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An Information Portal to 106082 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Sequence Clustering and Redundancy Reduction Results
1PN8
Sequence Clusters for the Sequence Entities in PDB 1PN8
Entity #1: Chains: D - E-tRNA rna, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 164 35
95% 195 202 32
90% 195 202 33
70% 272 281 23
50% 272 281 33
40% 272 281 44
30% 272 281 68
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 19 1853
95% 12 21 2100
90% 12 21 2131
70% 14 23 1964
50% 145 156 120
40% 148 159 147
30% 150 161 169
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.