1PN8

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.


Sequence Similarity Clusters for the Entities in PDB 1PN8

Entity #1 | Chains: D
E-tRNA rna, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: O
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 213 220 54
95 % 292 299 37
90 % 292 299 41
70 % 444 453 17
50 % 457 466 24
40 % 457 466 38
30 % 457 466 57
Entity #3 | Chains: L
50S ribosomal protein L11 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2672
95 % 12 21 2966
90 % 12 21 3004
70 % 15 24 2520
50 % 221 232 150
40 % 224 235 161
30 % 227 238 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures