1PN8

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.


Sequence Similarity Clusters for the Entities in PDB 1PN8

Entity #1 | Chains: D
E-tRNA rna, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: O
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 211 218 54
95 % 272 279 39
90 % 272 279 45
70 % 421 430 21
50 % 434 443 26
40 % 434 443 39
30 % 434 443 58
Entity #3 | Chains: L
50S ribosomal protein L11 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2613
95 % 12 21 2899
90 % 12 21 2935
70 % 15 24 2450
50 % 218 229 148
40 % 221 232 159
30 % 224 235 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures