1PN8

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.


Sequence Similarity Clusters for the Entities in PDB 1PN8

Entity #1 | Chains: D
E-tRNA rna, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: O
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 210 217 50
95 % 269 276 40
90 % 269 276 44
70 % 397 406 22
50 % 402 411 25
40 % 402 411 35
30 % 402 411 55
Entity #3 | Chains: L
50S ribosomal protein L11 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 2399
95 % 12 21 2705
90 % 12 21 2750
70 % 15 24 2282
50 % 206 217 140
40 % 209 220 154
30 % 212 223 168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.