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An Information Portal to 107754 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
Sequence Clustering and Redundancy Reduction Results
1PN7
Sequence Clusters for the Sequence Entities in PDB 1PN7
Entity #1: Chains: C - P-tRNA rna, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 165 35
95% 197 205 31
90% 197 205 33
70% 276 286 24
50% 276 286 34
40% 276 286 44
30% 276 286 69
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 19 1889
95% 11 21 2140
90% 11 21 2167
70% 13 23 2001
50% 148 160 134
40% 151 163 155
30% 153 165 173
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.