POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
Sequence Clustering and Redundancy Reduction Results
1PN7
Sequence Clusters for the Sequence Entities in PDB 1PN7
Entity #1: Chains: C - P-tRNA rna, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 183 46
95% 219 227 38
90% 219 227 42
70% 301 311 23
50% 302 312 32
40% 302 312 42
30% 302 312 57
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 19 1953
95% 11 21 2208
90% 11 21 2239
70% 14 24 1885
50% 152 164 145
40% 155 167 158
30% 158 170 173
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.