POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
Sequence Clustering and Redundancy Reduction Results
1PN7
Sequence Clusters for the Sequence Entities in PDB 1PN7
Entity #1: Chains: C - P-tRNA rna, length: 62 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: O - 30S ribosomal protein S12 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 166 36
95% 198 206 31
90% 198 206 33
70% 278 288 24
50% 278 288 34
40% 278 288 44
30% 278 288 69
Entity #3: Chains: L - 50S ribosomal protein L11 protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 19 1905
95% 11 21 2154
90% 11 21 2181
70% 13 23 2012
50% 149 161 135
40% 152 164 155
30% 155 167 171
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.