Sequence Similarity Clusters for the Entities in PDB 1PMO

Entity #1 | Chains: A,B,C,D,E,F
Glutamate decarboxylase beta protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 905
95 % 6 9 1084 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.1
PDBFlex
90 % 6 9 1110
70 % 6 9 1156
50 % 6 9 1183
40 % 7 10 1133
30 % 7 10 1128

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures