Sequence Similarity Clusters for the Entities in PDB 1PMO

Entity #1 | Chains: A,B,C,D,E,F
Glutamate decarboxylase beta protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 773
95 % 6 9 1026 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.1
PDBFlex
90 % 6 9 1053
70 % 6 9 1087
50 % 6 9 1133
40 % 7 10 1092
30 % 7 10 1074

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures