Sequence Similarity Clusters for the Entities in PDB 1PML

Entity #1 | Chains: A,B,C
TISSUE PLASMINOGEN ACTIVATOR KRINGLE 2 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11094
95 % 1 3 11066 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 1 3 10923
70 % 1 3 10361
50 % 1 3 9375
40 % 18 31 1430
30 % 18 31 1407

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures