Sequence Similarity Clusters for the Entities in PDB 1PML

Entity #1 | Chains: A,B,C
TISSUE PLASMINOGEN ACTIVATOR KRINGLE 2 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10418
95 % 1 3 10409 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 1 3 10275
70 % 1 3 9738
50 % 1 3 8838
40 % 18 31 1362
30 % 18 31 1342

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.