Sequence Similarity Clusters for the Entities in PDB 1PMK

Entity #1 | Chains: A,B
PLASMINOGEN KRINGLE 4 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16155
95 % 4 4 15024 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14714
70 % 12 12 4913
50 % 17 25 2006
40 % 19 34 1190
30 % 19 34 1187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures