Sequence Similarity Clusters for the Entities in PDB 1PMD

Entity #1 | Chains: A
PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME protein, length: 675 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 10572
95 % 9 9 7688 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 9 9 7630
70 % 10 10 5076
50 % 11 11 4482
40 % 11 11 4228
30 % 11 11 3820

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures