Sequence Similarity Clusters for the Entities in PDB 1PMD

Entity #1 | Chains: A
PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME protein, length: 675 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62391
95 % 5 5 13432 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 5 5 13206
70 % 6 6 7177
50 % 7 7 6004
40 % 7 7 5571
30 % 7 7 4919

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures