Sequence Similarity Clusters for the Entities in PDB 1PMD

Entity #1 | Chains: A
PEPTIDOGLYCAN SYNTHESIS MULTIFUNCTIONAL ENZYME protein, length: 675 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25961
95 % 5 5 11417 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 5 5 11269
70 % 6 6 6617
50 % 7 7 5842
40 % 7 7 5486
30 % 7 7 4925

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures