Sequence Similarity Clusters for the Entities in PDB 1PMA

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 13 210
95 % 7 13 296
90 % 7 13 311
70 % 7 13 346
50 % 9 16 301
40 % 1018 1129 3
30 % 1774 1964 3
Entity #2 | Chains: 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z
PROTEASOME protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 235
95 % 7 11 336
90 % 7 11 362
70 % 7 11 399
50 % 8 13 380
40 % 8 13 408
30 % 522 550 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.