Sequence Similarity Clusters for the Entities in PDB 1PMA

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 183
95 % 7 15 242 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 15 259
70 % 7 15 291
50 % 9 18 267
40 % 1026 1144 3
30 % 1788 1989 3
Entity #2 | Chains: 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z
PROTEASOME protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 202
95 % 7 13 277 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 7 13 290
70 % 7 13 327
50 % 8 15 313
40 % 8 15 330
30 % 526 557 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.