Sequence Similarity Clusters for the Entities in PDB 1PMA

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 173
95 % 7 16 237
90 % 7 16 249
70 % 7 16 283
50 % 9 19 243
40 % 1026 1149 3
30 % 1788 1997 3
Entity #2 | Chains: 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z
PROTEASOME protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 14 191
95 % 7 14 254
90 % 7 14 270
70 % 7 14 306
50 % 8 16 287
40 % 8 16 306
30 % 526 560 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures