Sequence Similarity Clusters for the Entities in PDB 1PMA

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 16 191
95 % 7 16 246 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 16 254
70 % 7 16 284
50 % 9 19 252
40 % 1026 1165 3
30 % 1788 2025 3
Entity #2 | Chains: 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z
PROTEASOME protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 208
95 % 7 14 264 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 7 14 276
70 % 7 14 312
50 % 8 16 299
40 % 8 16 330
30 % 526 562 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures