Sequence Similarity Clusters for the Entities in PDB 1PMA

Entity #1 | Chains: A,C,D,E,F,G,H,I,J,K,L,M,N,O
PROTEASOME protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 13 216
95 % 7 13 303
90 % 7 13 319
70 % 7 13 356
50 % 9 16 309
40 % 1026 1137 3
30 % 1788 1978 3
Entity #2 | Chains: 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z
PROTEASOME protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 242
95 % 7 11 338
90 % 7 11 364
70 % 7 11 401
50 % 8 13 389
40 % 8 13 416
30 % 526 554 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.