1PLG

EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID


Sequence Similarity Clusters for the Entities in PDB 1PLG

Entity #1 | Chains: L
IGG2A=KAPPA= protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61740
95 % 95 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 103 156 149
70 % 1226 2416 1
50 % 2505 4892 1
40 % 2505 4892 1
30 % 2854 5759 1
Entity #2 | Chains: H
IGG2A=KAPPA= protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61739
95 % 1 1 43253
90 % 1 5 5931
70 % 1215 2366 2
50 % 2506 4892 1
40 % 2506 4892 1
30 % 2855 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures