1PLG

EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)-POLYSIALIC ACID


Sequence Similarity Clusters for the Entities in PDB 1PLG

Entity #1 | Chains: L
IGG2A=KAPPA= protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64928
95 % 92 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 103 162 146
70 % 1284 2538 1
50 % 2632 5152 1
40 % 3014 5806 1
30 % 3696 7240 1
Entity #2 | Chains: H
IGG2A=KAPPA= protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64927
95 % 1 1 52663
90 % 1 6 5216
70 % 1276 2497 2
50 % 2633 5152 1
40 % 3015 5806 1
30 % 3697 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures