Sequence Similarity Clusters for the Entities in PDB 1PKU

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Nucleoside Diphosphate Kinase I protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5424
95 % 1 1 6081 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 6081
70 % 3 3 2008
50 % 100 128 55
40 % 126 156 34
30 % 127 157 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures