Sequence Similarity Clusters for the Entities in PDB 1PKU

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Nucleoside Diphosphate Kinase I protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5553
95 % 1 1 6204 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 6208
70 % 3 3 2068
50 % 100 129 65
40 % 126 157 36
30 % 127 158 54

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures