Sequence Similarity Clusters for the Entities in PDB 1PKU

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Nucleoside Diphosphate Kinase I protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5232
95 % 1 1 5559 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 5590
70 % 3 3 2064
50 % 100 129 74
40 % 127 158 39
30 % 127 158 57

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures