Sequence Similarity Clusters for the Entities in PDB 1PKU

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Nucleoside Diphosphate Kinase I protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5279
95 % 1 1 5940 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 5937
70 % 3 3 1963
50 % 98 125 65
40 % 124 153 32
30 % 125 154 50

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.