Sequence Similarity Clusters for the Entities in PDB 1PKQ

Entity #1 | Chains: A,F
(8-18C5) chimeric Fab, light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39562
95 % 1 1 30471 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 631 746 3
70 % 2018 2392 1
50 % 4091 4843 1
40 % 4091 4843 1
30 % 4853 5705 1
Entity #2 | Chains: B,G
(8-18C5) chimeric Fab, heavy chain protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39020
95 % 1 1 30171 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 29114
70 % 1975 2342 2
50 % 4092 4843 1
40 % 4092 4843 1
30 % 4854 5705 1
Entity #3 | Chains: E,J
Myelin Oligodendrocyte Glycoprotein protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29325
95 % 3 3 20044 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 3 19494
70 % 3 3 17971
50 % 3 3 15600
40 % 6 7 7664
30 % 6 7 6756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures