Sequence Similarity Clusters for the Entities in PDB 1PKQ

Entity #1 | Chains: A,F
(8-18C5) chimeric Fab, light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40343
95 % 1 1 31028 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 669 788 2
70 % 2083 2474 1
50 % 4225 5011 1
40 % 4225 5011 1
30 % 5053 5941 1
Entity #2 | Chains: B,G
(8-18C5) chimeric Fab, heavy chain protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39789
95 % 1 1 30723 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 29627
70 % 2040 2424 2
50 % 4226 5011 1
40 % 4226 5011 1
30 % 5054 5941 1
Entity #3 | Chains: E,J
Myelin Oligodendrocyte Glycoprotein protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29910
95 % 3 3 20454 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 3 19878
70 % 3 3 18309
50 % 3 3 15873
40 % 6 7 7816
30 % 6 7 6886

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures