Sequence Similarity Clusters for the Entities in PDB 1PKQ

Entity #1 | Chains: A,F
(8-18C5) chimeric Fab, light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43004
95 % 1 1 36138 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 701 844 2
70 % 2234 2696 1
50 % 4543 5473 1
40 % 5101 6175 1
30 % 6339 7653 1
Entity #2 | Chains: B,G
(8-18C5) chimeric Fab, heavy chain protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32778
95 % 1 1 28411 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 27304
70 % 2202 2655 2
50 % 4544 5473 1
40 % 5102 6175 1
30 % 6340 7653 1
Entity #3 | Chains: E,J
Myelin Oligodendrocyte Glycoprotein protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27644
95 % 3 3 18363 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 3 17878
70 % 3 3 16492
50 % 3 3 14422
40 % 6 7 7449
30 % 38 41 908

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures