Sequence Similarity Clusters for the Entities in PDB 1PKQ

Entity #1 | Chains: A,F
(8-18C5) chimeric Fab, light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37593
95 % 1 1 28978 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 573 676 3
70 % 1566 1822 2
50 % 3821 4489 1
40 % 3821 4489 1
30 % 4527 5290 1
Entity #2 | Chains: B,G
(8-18C5) chimeric Fab, heavy chain protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37072
95 % 1 1 28690 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 27708
70 % 1847 2172 1
50 % 3822 4489 1
40 % 3822 4489 1
30 % 4528 5290 1
Entity #3 | Chains: E,J
Myelin Oligodendrocyte Glycoprotein protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27793
95 % 3 3 18992 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 3 18483
70 % 3 3 17099
50 % 3 3 14885
40 % 6 7 7291
30 % 6 7 6429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.