Sequence Similarity Clusters for the Entities in PDB 1PKQ

Entity #1 | Chains: A,F
(8-18C5) chimeric Fab, light chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38731
95 % 1 1 29859 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 593 701 3
70 % 1932 2287 1
50 % 3919 4633 1
40 % 3919 4633 1
30 % 4650 5461 1
Entity #2 | Chains: B,G
(8-18C5) chimeric Fab, heavy chain protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38200
95 % 1 1 29563 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 28530
70 % 1896 2244 2
50 % 3920 4633 1
40 % 3920 4633 1
30 % 4651 5461 1
Entity #3 | Chains: E,J
Myelin Oligodendrocyte Glycoprotein protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28698
95 % 3 3 19626 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 3 3 19092
70 % 3 3 17602
50 % 3 3 15291
40 % 6 7 7517
30 % 6 7 6635

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.