Sequence Similarity Clusters for the Entities in PDB 1PKD

Entity #1 | Chains: A,C
Cell division protein kinase 2 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 288 367 40
95 % 300 386 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 300 386 39
70 % 300 386 47
50 % 320 436 71
40 % 329 470 56
30 % 2789 4473 2
Entity #2 | Chains: B,D
Cyclin A2 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 84 190
95 % 48 106 205 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 52 110 185
70 % 52 110 206
50 % 52 110 237
40 % 52 110 263
30 % 55 116 266

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures