Sequence Similarity Clusters for the Entities in PDB 1PKD

Entity #1 | Chains: A,C
Cell division protein kinase 2 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 283 364 21
95 % 293 379 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 293 379 36
70 % 293 379 43
50 % 309 404 65
40 % 322 460 48
30 % 2394 3879 2
Entity #2 | Chains: B,D
Cyclin A2 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 86 163
95 % 47 105 149 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 51 109 156
70 % 51 109 173
50 % 51 109 214
40 % 51 109 235
30 % 54 115 233

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.