Sequence Similarity Clusters for the Entities in PDB 1PKD

Entity #1 | Chains: A,C
Cell division protein kinase 2 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 287 366 26
95 % 297 383 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 297 383 38
70 % 297 383 46
50 % 317 433 66
40 % 326 465 54
30 % 2698 4330 2
Entity #2 | Chains: B,D
Cyclin A2 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 83 185
95 % 47 105 162 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 51 109 163
70 % 51 109 183
50 % 51 109 226
40 % 51 109 250
30 % 54 115 259

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures