Sequence Similarity Clusters for the Entities in PDB 1PK6

Entity #1 | Chains: A
Complement C1q subcomponent, A chain precursor protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7427
95 % 2 5 7999
90 % 2 5 7942
70 % 2 5 7695
50 % 2 5 7084
40 % 4 15 2224
30 % 14 32 808
Entity #2 | Chains: B
Complement C1q subcomponent, B chain precursor protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7423
95 % 2 5 7994
90 % 2 5 7937
70 % 2 5 7690
50 % 3 10 3524
40 % 5 15 2224
30 % 15 32 808
Entity #3 | Chains: C
Complement C1q subcomponent, C chain precursor protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7430
95 % 2 5 8004 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 7947
70 % 2 5 7700
50 % 4 10 3524
40 % 6 15 2224
30 % 16 32 808

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures