Sequence Similarity Clusters for the Entities in PDB 1PK6

Entity #1 | Chains: A
Complement C1q subcomponent, A chain precursor protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7569
95 % 2 5 8133
90 % 2 5 8074
70 % 2 5 7816
50 % 2 5 7196
40 % 4 15 2281
30 % 14 32 818
Entity #2 | Chains: B
Complement C1q subcomponent, B chain precursor protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 7564
95 % 2 5 8127
90 % 2 5 8068
70 % 2 5 7810
50 % 3 10 3596
40 % 5 15 2281
30 % 15 32 818
Entity #3 | Chains: C
Complement C1q subcomponent, C chain precursor protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7574
95 % 2 5 8138 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 8079
70 % 2 5 7821
50 % 4 10 3596
40 % 6 15 2281
30 % 16 32 818

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures