Sequence Similarity Clusters for the Entities in PDB 1PK6

Entity #1 | Chains: A
Complement C1q subcomponent, A chain precursor protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7190
95 % 2 6 7296 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 6 7259
70 % 2 6 7061
50 % 2 6 6531
40 % 12 32 898
30 % 14 37 745
Entity #2 | Chains: B
Complement C1q subcomponent, B chain precursor protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7189
95 % 2 6 7295 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 6 7258
70 % 2 6 7060
50 % 3 12 3193
40 % 13 32 898
30 % 15 37 745
Entity #3 | Chains: C
Complement C1q subcomponent, C chain precursor protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7188
95 % 2 6 7294 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 6 7257
70 % 2 6 7059
50 % 4 12 3193
40 % 14 32 898
30 % 16 37 745

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures