Sequence Similarity Clusters for the Entities in PDB 1PK6

Entity #1 | Chains: A
Complement C1q subcomponent, A chain precursor protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 6938
95 % 2 6 7530
90 % 2 6 7488
70 % 2 6 7281
50 % 2 6 6715
40 % 4 18 2067
30 % 14 35 796
Entity #2 | Chains: B
Complement C1q subcomponent, B chain precursor protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 6928
95 % 2 6 7522
90 % 2 6 7483
70 % 2 6 7277
50 % 3 12 3244
40 % 5 18 2067
30 % 15 35 796
Entity #3 | Chains: C
Complement C1q subcomponent, C chain precursor protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 6946
95 % 2 6 7541 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 6 7498
70 % 2 6 7292
50 % 4 12 3244
40 % 6 18 2067
30 % 16 35 796

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures