Sequence Similarity Clusters for the Entities in PDB 1PK6

Entity #1 | Chains: A
Complement C1q subcomponent, A chain precursor protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7236
95 % 2 5 7790 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 5 7741
70 % 2 5 7477
50 % 2 5 6886
40 % 4 15 2173
30 % 14 32 791
Entity #2 | Chains: B
Complement C1q subcomponent, B chain precursor protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7233
95 % 2 5 7786 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 7737
70 % 2 5 7472
50 % 3 10 3447
40 % 5 15 2173
30 % 15 32 791
Entity #3 | Chains: C
Complement C1q subcomponent, C chain precursor protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7239
95 % 2 5 7795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 7746
70 % 2 5 7483
50 % 4 10 3447
40 % 6 15 2173
30 % 16 32 791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.