Sequence Similarity Clusters for the Entities in PDB 1PK1

Entity #1 | Chains: A,C
Polyhomeotic-proximal chromatin protein protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47647
95 % 2 2 24591 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 2 2 23797
70 % 2 2 21656
50 % 2 4 4633
40 % 3 6 3179
30 % 4 12 1490
Entity #2 | Chains: B,D
Sex comb on midleg CG9495-PA protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47648
95 % 2 2 15017 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 14739
70 % 2 2 13803
50 % 2 2 12252
40 % 4 6 3179
30 % 5 12 1490

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.