Sequence Similarity Clusters for the Entities in PDB 1PK1

Entity #1 | Chains: A,C
Polyhomeotic-proximal chromatin protein protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46563
95 % 2 2 26328 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 2 2 24801
70 % 2 2 22472
50 % 2 4 4839
40 % 3 6 3301
30 % 4 12 1562
Entity #2 | Chains: B,D
Sex comb on midleg CG9495-PA protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43842
95 % 2 2 15734 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15399
70 % 2 2 14407
50 % 2 2 12716
40 % 4 6 3301
30 % 5 12 1562

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures