Sequence Similarity Clusters for the Entities in PDB 1PK1

Entity #1 | Chains: A,C
Polyhomeotic-proximal chromatin protein protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48682
95 % 2 2 25121 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 2 2 24287
70 % 2 2 22074
50 % 2 4 4738
40 % 3 6 3257
30 % 4 12 1525
Entity #2 | Chains: B,D
Sex comb on midleg CG9495-PA protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48683
95 % 2 2 15343 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15066
70 % 2 2 14112
50 % 2 2 12513
40 % 4 6 3257
30 % 5 12 1525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures