Sequence Similarity Clusters for the Entities in PDB 1PJM

Entity #1 | Chains: A
Retinoblastoma-associated protein protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75235
95 % 1 1 52617
90 % 1 1 49909
70 % 1 1 43704
50 % 1 1 37341
40 % 1 1 32985
30 % 1 1 28054
Entity #2 | Chains: B
Importin alpha-2 subunit protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 64 549
95 % 55 64 744 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.6
PDBFlex
90 % 62 73 629
70 % 62 73 675
50 % 76 97 444
40 % 78 101 457
30 % 78 101 456

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.