Sequence Similarity Clusters for the Entities in PDB 1PJM

Entity #1 | Chains: A
Retinoblastoma-associated protein protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47694
95 % 1 1 39605
90 % 1 1 37754
70 % 1 1 33423
50 % 1 1 28397
40 % 1 1 24898
30 % 1 1 20737
Entity #2 | Chains: B
Importin alpha-2 subunit protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 70 552
95 % 61 70 690 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.5
PDBFlex
90 % 70 81 574
70 % 70 81 616
50 % 84 105 443
40 % 86 109 462
30 % 86 110 448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures