Sequence Similarity Clusters for the Entities in PDB 1PIV

Entity #1 | Chains: 0
POLIOVIRUS TYPE 3 (SUBUNIT VP1) protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
POLIOVIRUS TYPE 3 (SUBUNIT VP1) protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 12725
95 % 6 9 7961 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 6 9 7901
70 % 19 36 1591
50 % 24 43 1364
40 % 77 160 279
30 % 77 160 293
Entity #3 | Chains: 2
POLIOVIRUS TYPE 3 (SUBUNIT VP2) protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10763
95 % 6 9 7992 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 6 9 7933
70 % 23 49 1152
50 % 72 160 338
40 % 72 160 353
30 % 90 195 169
Entity #4 | Chains: 3
POLIOVIRUS TYPE 3 (SUBUNIT VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10838
95 % 6 9 8044 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 6 9 7987
70 % 24 49 1154
50 % 77 169 247
40 % 77 171 262
30 % 96 210 153
Entity #5 | Chains: 4
POLIOVIRUS TYPE 3 (SUBUNIT VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 7816
95 % 6 9 8376 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 18 33 1811
70 % 36 87 591
50 % 64 122 452
40 % 65 123 477
30 % 65 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures