Sequence Similarity Clusters for the Entities in PDB 1PID

Entity #1 | Chains: A,C
DESPENTAPEPTIDE INSULIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 284 290 6
95 % 290 296 8 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 292 298 10
70 % 298 304 12
50 % 298 304 16
40 % 298 304 29
30 % 298 304 46
Entity #2 | Chains: B,D
DESPENTAPEPTIDE INSULIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 260 266 7
95 % 297 303 7 Flexibility: Medium
Max RMSD: 6.8, Avg RMSD: 3.5
PDBFlex
90 % 297 303 8
70 % 300 306 13
50 % 300 306 17
40 % 300 306 30
30 % 300 306 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures