Sequence Similarity Clusters for the Entities in PDB 1PH6

Entity #1 | Chains: G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Telomere-binding protein alpha subunit protein, length: 461 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3441
95 % 3 15 4214 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 1.9
PDBFlex
90 % 3 15 4243
70 % 3 15 4168
50 % 3 15 4023
40 % 3 15 3851
30 % 3 15 3565
Entity #4 | Chains: B
Telomere-binding protein beta subunit protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5586
95 % 1 11 6246 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6228
70 % 1 11 6075
50 % 1 11 5682
40 % 1 11 5318
30 % 1 11 4778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.