Sequence Similarity Clusters for the Entities in PDB 1PH5

Entity #1 | Chains: G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*(3DR)P*GP*G)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Telomere-binding protein alpha subunit protein, length: 459 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 4402
95 % 5 15 4723 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 1.9
PDBFlex
90 % 5 15 4755
70 % 5 15 4634
50 % 5 15 4449
40 % 5 15 4194
30 % 5 15 3752
Entity #4 | Chains: B
Telomere-binding protein beta subunit protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 6544
95 % 3 11 6692 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 11 6681
70 % 3 11 6481
50 % 3 11 6033
40 % 3 11 5611
30 % 3 11 4944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures