Sequence Similarity Clusters for the Entities in PDB 1PH4

Entity #1 | Chains: G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*CP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Telomere-binding protein alpha subunit protein, length: 460 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 4382
95 % 4 15 4709 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 4 15 4738
70 % 4 15 4617
50 % 4 15 4433
40 % 4 15 4180
30 % 4 15 3744
Entity #4 | Chains: B
Telomere-binding protein beta subunit protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 6516
95 % 2 11 6667 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 11 6653
70 % 2 11 6446
50 % 2 11 6009
40 % 2 11 5586
30 % 2 11 4923

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures