Sequence Similarity Clusters for the Entities in PDB 1PH2

Entity #1 | Chains: G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*G)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Telomere-binding protein alpha subunit protein, length: 459 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 15 3688
95 % 15 15 4484 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 15 15 4523
70 % 15 15 4435
50 % 15 15 4259
40 % 15 15 4064
30 % 15 15 3769
Entity #4 | Chains: B
Telomere-binding protein beta subunit protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 5961
95 % 11 11 6626 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 11 11 6617
70 % 11 11 6450
50 % 11 11 6025
40 % 11 11 5640
30 % 11 11 5063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures