Sequence Similarity Clusters for the Entities in PDB 1PH1

Entity #1 | Chains: D,G,H
5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Telomere-binding protein alpha subunit protein, length: 461 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 3535
95 % 9 15 4317 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 9 15 4346
70 % 9 15 4267
50 % 9 15 4107
40 % 9 15 3933
30 % 9 15 3648
Entity #3 | Chains: B
Telomere-binding protein beta subunit protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 5729
95 % 7 11 6396 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 11 6377
70 % 7 11 6228
50 % 7 11 5822
40 % 7 11 5450
30 % 7 11 4892

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.