Sequence Similarity Clusters for the Entities in PDB 1PGW

Entity #1 | Chains: 1
BEAN POD MOTTLE VIRUS SMALL (S) SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27544
95 % 2 3 24159 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 3 23363
70 % 2 3 21259
50 % 2 3 18284
40 % 2 3 16167
30 % 2 3 13543
Entity #2 | Chains: 2
BEAN POD MOTTLE VIRUS LARGE (L) SUBUNIT protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27543
95 % 2 3 24157 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 23362
70 % 2 3 21258
50 % 2 10 6565
40 % 2 10 6092
30 % 2 10 5336

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures