Sequence Similarity Clusters for the Entities in PDB 1PGW

Entity #1 | Chains: 1
BEAN POD MOTTLE VIRUS SMALL (S) SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27011
95 % 2 3 22483 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 3 21761
70 % 2 3 19952
50 % 2 3 17305
40 % 2 3 15432
30 % 2 3 13189
Entity #2 | Chains: 2
BEAN POD MOTTLE VIRUS LARGE (L) SUBUNIT protein, length: 351 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 24949
95 % 2 3 21091 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 20510
70 % 2 3 18901
50 % 2 8 7233
40 % 2 8 6706
30 % 2 8 5961

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.