Sequence Similarity Clusters for the Entities in PDB 1PGR

Entity #1 | Chains: A,C,E,G
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6803
95 % 5 6 4626 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 6 4656
70 % 8 9 3458
50 % 8 9 3376
40 % 8 9 3274
30 % 8 9 3072
Entity #2 | Chains: B,D,F,H
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13430
95 % 2 2 12888 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 12679
70 % 2 2 11932
50 % 2 2 10659
40 % 2 2 9658
30 % 2 2 8420

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures