Sequence Similarity Clusters for the Entities in PDB 1PGR

Entity #1 | Chains: A,C,E,G
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6558
95 % 5 6 4459 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 6 4480
70 % 8 9 3324
50 % 8 9 3243
40 % 8 9 3155
30 % 8 9 2964
Entity #2 | Chains: B,D,F,H
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12924
95 % 2 2 12435 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 12235
70 % 2 2 11524
50 % 2 2 10302
40 % 2 2 9343
30 % 2 2 8145

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.