Sequence Similarity Clusters for the Entities in PDB 1PGR

Entity #1 | Chains: A,C,E,G
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6665
95 % 5 6 4521 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 5 6 4545
70 % 8 9 3373
50 % 8 9 3288
40 % 8 9 3193
30 % 8 9 2997
Entity #2 | Chains: B,D,F,H
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13116
95 % 2 2 12602 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 2 12404
70 % 2 2 11688
50 % 2 2 10451
40 % 2 2 9474
30 % 2 2 8262

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures