Sequence Similarity Clusters for the Entities in PDB 1PGL

Entity #1 | Chains: 3
5'-R(*AP*GP*UP*CP*UP*C)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
BEAN POD MOTTLE VIRUS SMALL (S) SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28628
95 % 1 3 23786 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 3 22980
70 % 1 3 20972
50 % 1 3 18146
40 % 1 3 16163
30 % 1 3 13816
Entity #3 | Chains: 2
BEAN POD MOTTLE VIRUS LARGE (L) SUBUNIT protein, length: 370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26458
95 % 1 3 22325 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21673
70 % 1 3 19887
50 % 1 10 6231
40 % 1 10 5817
30 % 1 10 5224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures