Sequence Similarity Clusters for the Entities in PDB 1PGL

Entity #1 | Chains: 3
5'-R(*AP*GP*UP*CP*UP*C)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
BEAN POD MOTTLE VIRUS SMALL (S) SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26685
95 % 1 3 22195
90 % 1 3 21488
70 % 1 3 19712
50 % 1 3 17117
40 % 1 3 15268
30 % 1 3 13057
Entity #3 | Chains: 2
BEAN POD MOTTLE VIRUS LARGE (L) SUBUNIT protein, length: 370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24629
95 % 1 3 20808
90 % 1 3 20243
70 % 1 3 18665
50 % 1 8 7155
40 % 1 8 6631
30 % 1 8 5889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.