Sequence Similarity Clusters for the Entities in PDB 1PGL

Entity #1 | Chains: 3
5'-R(*AP*GP*UP*CP*UP*C)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
BEAN POD MOTTLE VIRUS SMALL (S) SUBUNIT protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29029
95 % 1 3 24116 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 3 23295
70 % 1 3 21243
50 % 1 3 18358
40 % 1 3 16350
30 % 1 3 13980
Entity #3 | Chains: 2
BEAN POD MOTTLE VIRUS LARGE (L) SUBUNIT protein, length: 370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26855
95 % 1 3 22651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 21982
70 % 1 3 20160
50 % 1 10 6325
40 % 1 10 5901
30 % 1 10 5307

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures