Sequence Similarity Clusters for the Entities in PDB 1PGF

Entity #1 | Chains: A,B
PROSTAGLANDIN H2 SYNTHASE-1 protein, length: 576 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 26 940
95 % 30 31 1053 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 30 31 1083
70 % 30 31 1113
50 % 82 83 237
40 % 82 83 256
30 % 82 83 267

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures