Sequence Similarity Clusters for the Entities in PDB 1PG7

Entity #1 | Chains: H,I
humanized antibody D3H44 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20903
95 % 3 3 18227 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 3 3 17842
70 % 1242 2280 2
50 % 2560 4713 1
40 % 2560 4713 1
30 % 2941 5567 1
Entity #2 | Chains: L,M
humanized antibody D3H44 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21278
95 % 5 5 12436 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 389 720 3
70 % 1253 2327 1
50 % 2561 4713 1
40 % 2561 4713 1
30 % 2942 5567 1
Entity #3 | Chains: W,Y
murine antibody 6A6 Fab fragment protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41212
95 % 1 1 31341
90 % 19 45 393
70 % 1254 2327 1
50 % 2562 4713 1
40 % 2562 4713 1
30 % 2943 5567 1
Entity #4 | Chains: X,Z
murine antibody 6A6 Fab fragment protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40231
95 % 1 1 30784 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29610
70 % 1243 2280 2
50 % 2563 4713 1
40 % 2563 4713 1
30 % 2944 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.