Sequence Similarity Clusters for the Entities in PDB 1PG7

Entity #1 | Chains: H,I
humanized antibody D3H44 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21249
95 % 3 3 18496 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 3 3 18105
70 % 1285 2342 2
50 % 2650 4843 1
40 % 2650 4843 1
30 % 3038 5705 1
Entity #2 | Chains: L,M
humanized antibody D3H44 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21636
95 % 5 5 12603 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 406 746 3
70 % 1297 2392 1
50 % 2651 4843 1
40 % 2651 4843 1
30 % 3039 5705 1
Entity #3 | Chains: W,Y
murine antibody 6A6 Fab fragment protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41840
95 % 1 1 31805
90 % 19 45 436
70 % 1298 2392 1
50 % 2652 4843 1
40 % 2652 4843 1
30 % 3040 5705 1
Entity #4 | Chains: X,Z
murine antibody 6A6 Fab fragment protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40837
95 % 1 1 31235 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 30033
70 % 1286 2342 2
50 % 2653 4843 1
40 % 2653 4843 1
30 % 3041 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures