Sequence Similarity Clusters for the Entities in PDB 1PG7

Entity #1 | Chains: H,I
humanized antibody D3H44 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20786
95 % 3 3 20088 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 3 3 19522
70 % 1370 2511 2
50 % 2825 5180 1
40 % 3225 5834 1
30 % 3958 7269 1
Entity #2 | Chains: L,M
humanized antibody D3H44 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23410
95 % 5 5 14245 Flexibility: Medium
Max RMSD: 5.2, Avg RMSD: 3.0
PDBFlex
90 % 425 780 2
70 % 1379 2553 1
50 % 2826 5180 1
40 % 3226 5834 1
30 % 3959 7269 1
Entity #3 | Chains: W,Y
murine antibody 6A6 Fab fragment protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46037
95 % 1 1 38332 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 19 45 469
70 % 1380 2553 1
50 % 2827 5180 1
40 % 3227 5834 1
30 % 3960 7269 1
Entity #4 | Chains: X,Z
murine antibody 6A6 Fab fragment protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46036
95 % 1 1 38331 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 36556
70 % 1371 2511 2
50 % 2828 5180 1
40 % 3228 5834 1
30 % 3961 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures