Sequence Similarity Clusters for the Entities in PDB 1PG7

Entity #1 | Chains: H,I
humanized antibody D3H44 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20233
95 % 3 3 17649 Flexibility: Medium
Max RMSD: 5.5, Avg RMSD: 3.7
PDBFlex
90 % 3 3 17273
70 % 1204 2197 1
50 % 2478 4537 1
40 % 2478 4537 1
30 % 2841 5342 1
Entity #2 | Chains: L,M
humanized antibody D3H44 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 20600
95 % 4 4 13968 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 367 683 3
70 % 1006 1841 2
50 % 2479 4537 1
40 % 2479 4537 1
30 % 2842 5342 1
Entity #3 | Chains: W,Y
murine antibody 6A6 Fab fragment protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40021
95 % 1 1 30450
90 % 19 45 384
70 % 207 398 10
50 % 2480 4537 1
40 % 2480 4537 1
30 % 2843 5342 1
Entity #4 | Chains: X,Z
murine antibody 6A6 Fab fragment protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39056
95 % 1 1 29904
90 % 1 1 28773
70 % 1205 2197 1
50 % 2481 4537 1
40 % 2481 4537 1
30 % 2844 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.