Sequence Similarity Clusters for the Entities in PDB 1PFX

Entity #1 | Chains: C
FACTOR IXA protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39020
95 % 1 2 30027
90 % 1 2 28965
70 % 22 23 2535
50 % 22 23 2511
40 % 1604 1685 4
30 % 1739 1834 6
Entity #2 | Chains: L
FACTOR IXA protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43941
95 % 1 2 33137 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 31690
70 % 1 2 28299
50 % 72 74 747
40 % 72 74 782
30 % 72 74 774

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.