Sequence Similarity Clusters for the Entities in PDB 1PFX

Entity #1 | Chains: C
FACTOR IXA protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44246
95 % 1 2 36954 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 35280
70 % 22 23 2762
50 % 22 23 2734
40 % 1776 1873 4
30 % 1787 1887 7
Entity #2 | Chains: L
FACTOR IXA protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36107
95 % 1 2 30786 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 29510
70 % 1 2 26500
50 % 72 74 791
40 % 72 74 822
30 % 77 79 769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures