Sequence Similarity Clusters for the Entities in PDB 1PFO

Entity #1 | Chains: A
PERFRINGOLYSIN O protein, length: 500 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 10122
95 % 1 7 5387 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 1 7 5409
70 % 1 8 4560
50 % 1 8 4386
40 % 3 20 2028
30 % 3 20 1956

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures