Sequence Similarity Clusters for the Entities in PDB 1PF9

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
groEL protein protein, length: 524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 21 59
95 % 18 42 13 Flexibility: Medium
Max RMSD: 15.0, Avg RMSD: 5.5
PDBFlex
90 % 18 42 14
70 % 18 42 23
50 % 24 49 19
40 % 24 49 25
30 % 24 49 44
Entity #2 | Chains: O,P,Q,R,S,T,U
groES protein protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 221
95 % 7 14 306 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.2
PDBFlex
90 % 7 14 323
70 % 7 14 361
50 % 12 20 267
40 % 12 20 285
30 % 12 20 290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.