Sequence Similarity Clusters for the Entities in PDB 1PF9

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
groEL protein protein, length: 524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 21 80
95 % 19 45 13 Flexibility: Medium
Max RMSD: 15.0, Avg RMSD: 5.5
PDBFlex
90 % 19 45 14
70 % 19 45 21
50 % 25 52 18
40 % 25 52 30
30 % 25 52 49
Entity #2 | Chains: O,P,Q,R,S,T,U
groES protein protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 212
95 % 7 15 290 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.2
PDBFlex
90 % 7 15 304
70 % 7 15 355
50 % 12 21 264
40 % 12 21 275
30 % 12 21 287

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures