Sequence Similarity Clusters for the Entities in PDB 1PEM

Entity #1 | Chains: A
Ribonucleoside-diphosphate reductase 2 alpha chain protein, length: 714 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 12030
95 % 3 5 11580 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 5 11420
70 % 3 5 10786
50 % 3 5 10131
40 % 5 8 6292
30 % 5 8 5400

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6CGM 1 A Ribonucleoside-diphosphate reductase \cf2 \cf0 1423 1.17.4.1 | Details
2 6CGN 1 A Ribonucleoside-diphosphate reductase \cf2 \cf0 1423 1.17.4.1 | Details
3 1PEQ 1 A Ribonucleoside-diphosphate reductase 2 alpha chain 90371 1.17.4.1 | Details
4 1PEO 1 A Ribonucleoside-diphosphate reductase 2 alpha chain 90371 1.17.4.1 | Details
5 1PEM 1 A Ribonucleoside-diphosphate reductase 2 alpha chain 90371 1.17.4.1 | Details
6 6CGL 1 A, B Ribonucleoside-diphosphate reductase \cf2 \cf0 1423 1.17.4.1 | Details
7 1PEU 1 A Ribonucleoside-diphosphate reductase 2 alpha chain 90371 1.17.4.1 | Details
8 2BQ1 1 E, F RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 ALPHA SUBUNIT 90371 1.17.4.1 | Details