Sequence Similarity Clusters for the Entities in PDB 1PEK

Entity #1 | Chains: E
PROTEINASE K protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27129
95 % 70 87 578 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 70 87 607
70 % 70 87 650
50 % 75 94 593
40 % 185 237 211
30 % 193 252 220
Entity #2 | Chains: C
PEPTIDE PRO-ALA-PRO-PHE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
D-DAL-ALA-NH2 protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures