Sequence Similarity Clusters for the Entities in PDB 1PDU

Entity #1 | Chains: A,B
nuclear hormone receptor HR38 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32220
95 % 1 1 27851 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 26801
70 % 1 1 24198
50 % 9 19 1456
40 % 9 19 1446
30 % 730 1254 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures