Sequence Similarity Clusters for the Entities in PDB 1PDU

Entity #1 | Chains: A,B
nuclear hormone receptor HR38 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39071
95 % 1 1 30136 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 29076
70 % 1 1 26181
50 % 9 19 1389
40 % 9 19 1395
30 % 583 992 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures