Sequence Similarity Clusters for the Entities in PDB 1PDQ

Entity #1 | Chains: A
Polycomb protein protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59388
95 % 1 1 48586
90 % 1 1 46117
70 % 1 1 40465
50 % 5 8 8619
40 % 5 9 6805
30 % 5 9 5934
Entity #2 | Chains: B
Histone H3.3 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6AT0 1 A Heterochromatin protein 1 Chromo 1 domain, residues 17-76 7227
2 6ASZ 1 A Heterochromatin protein 1 Chromo 1 domain, residues 17-76 7227
3 5KOG 1 A Heterochromatin protein 1 unp residues 17-76 7227
4 1Q3L 1 A Heterochromatin protein 1 sequence database residues 17-76 7227
5 1PDQ 1 A Polycomb protein residues 15-77 7227
6 1KNA 1 A HETEROCHROMATIN PROTEIN 1 Residues 23-76 7227
7 1KNE 1 A HETEROCHROMATIN PROTEIN 1 Residues 17-76 7227
8 2K1B 1 A Chromobox protein homolog 7 Chromo domain: Residues 7-62 9606