Sequence Similarity Clusters for the Entities in PDB 1PDQ

Entity #1 | Chains: A
Polycomb protein protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59931
95 % 1 1 49024
90 % 1 1 46488
70 % 1 1 40770
50 % 5 8 8707
40 % 5 9 6879
30 % 5 9 5995
Entity #2 | Chains: B
Histone H3.3 protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6AT0 1 A Heterochromatin protein 1 Chromo 1 domain, residues 17-76 7227
2 6ASZ 1 A Heterochromatin protein 1 Chromo 1 domain, residues 17-76 7227
3 5KOG 1 A Heterochromatin protein 1 unp residues 17-76 7227
4 1Q3L 1 A Heterochromatin protein 1 sequence database residues 17-76 7227
5 1PDQ 1 A Polycomb protein residues 15-77 7227
6 1KNA 1 A HETEROCHROMATIN PROTEIN 1 Residues 23-76 7227
7 1KNE 1 A HETEROCHROMATIN PROTEIN 1 Residues 17-76 7227
8 2M2L 1 A Putative uncharacterized protein Entamoeba histolytica HP1 chromodomain 5759
9 2K1B 1 A Chromobox protein homolog 7 Chromo domain: Residues 7-62 9606