Sequence Similarity Clusters for the Entities in PDB 1PDM

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Baseplate structural protein Gp8 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 831
95 % 8 8 1020
90 % 8 8 1054
70 % 8 8 1100
50 % 8 8 1150
40 % 8 8 1159
30 % 8 8 1154

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures