Sequence Similarity Clusters for the Entities in PDB 1PDM

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Baseplate structural protein Gp8 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 854
95 % 8 8 1048
90 % 8 8 1082
70 % 8 8 1125
50 % 8 8 1179
40 % 8 8 1183
30 % 8 8 1179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures